4W2F

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
B, FBPF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C, GBPF07650KH domain (KH_2)KH domain- Domain
C, GBPF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
D, HBPF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D, HBPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E, IBPF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E, IBPF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
F, JBPF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
G, KBPF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
H, LBPF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
I, MBPF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
J, NBPF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20e- Family
K, OBPF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L, PBPF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
M, QBPF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
N, RBPF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O, SBPF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
P, TBPF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
Q, UBPF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
R, VBPF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
S, WBPF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
T, XBPF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
U, YBPF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family
BA, FCPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
BA, FCPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
CA, GCPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
DA, HCPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
EA, ICPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
EA, ICPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
FA, JCPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
GA, KCPF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
GA, KCPF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
HA, LCPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
IA, MCPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
JA, NCPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
KA, OCPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
LA, PCPF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
MA, QCPF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
NA, RCPF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
OA, SCPF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PA, TCPF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
QA, UCPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
RA, VCPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
SA, WCPF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
SA, WCPF00467KOW motif (KOW)KOW motif- Family
TA, XCPF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
TA, XCPF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
UA, YCPF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
VA, ZCPF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
AD, WAPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
BD, XAPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
CD, YAPF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
DD, ZAPF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
AB, EDPF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
BB, FDPF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
CB, GDPF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
DB, HDPF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
AA, CA16S Ribosomal RNAnone none none
AB, CB30S Ribosomal Protein S2
AC, CC30S Ribosomal Protein S3
AD, CD30S Ribosomal Protein S4
AE, CE30S Ribosomal Protein S5
AF, CF30S Ribosomal Protein S6
AG, CG30S Ribosomal Protein S7
AH, CH30S Ribosomal Protein S8
AI, CI30S Ribosomal Protein S9
AJ, CJ30S Ribosomal Protein S10
AK, CK30S Ribosomal Protein S11
AL, CL30S Ribosomal Protein S12
AM, CM30S Ribosomal Protein S13
AN, CN30S Ribosomal Protein S14
AO, CO30S Ribosomal Protein S15
AP, CP30S Ribosomal Protein S16
AQ, CQ30S Ribosomal Protein S17
AR, CR30S Ribosomal Protein S18
AS, CS30S Ribosomal Protein S19
AT, CT30S Ribosomal Protein S20
AU, CU30S Ribosomal Protein THX
AV, CVmRNAnone none none
AW, AY, CW, CYA/P-site tRNAnone none none
AX, CXE-site tRNAnone none none
BA, DA23S Ribosomal RNAnone none none
BB, DB5S Ribosomal RNAnone none none
BD, DD50S Ribosomal Protein L2
BE, DE50S Ribosomal Protein L3
BF, DF50S Ribosomal Protein L4
BG, DG50S Ribosomal Protein L5
BH, DH50S Ribosomal Protein L6
BI, DI50S Ribosomal Protein L9
BN, DN50S Ribosomal Protein L13
BO, DO50S Ribosomal Protein L14
BP, DP50S Ribosomal Protein L15
BQ, DQ50S Ribosomal Protein L16
BR, DR50S Ribosomal Protein L17
BS, DS50S Ribosomal Protein L18
BT, DT50S Ribosomal Protein L19
BU, DU50S Ribosomal Protein L20
BV, DV50S Ribosomal Protein L21
BW, DW50S Ribosomal Protein L22
BX, DX50S Ribosomal Protein L23
BY, DY50S Ribosomal Protein L24
BZ, DZ50S Ribosomal Protein L25
B0, D050S Ribosomal Protein L27
B1, D150S Ribosomal Protein L28
B2, D250S Ribosomal Protein L29
B3, D350S Ribosomal Protein L30
B4, D450S Ribosomal Protein L31
B5, D550S Ribosomal Protein L32
B6, D650S Ribosomal Protein L33
B7, D750S Ribosomal Protein L34
B8, D850S Ribosomal Protein L35
B9, D950S Ribosomal Protein L36