Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd4owrc_ Alpha and beta proteins (a+b) VSV matrix protein VSV matrix protein VSV matrix protein automated matches VSIV (Vesicular stomatitis Indiana virus (strain 85CLB South America) ) [TaxId: 434490 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00400e4owrA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
BPF21240e4owrB1 A: extended segmentsX: Gle2-binding sequence (GLEBS) of Nup98 (From Topology)H: Gle2-binding sequence (GLEBS) of Nup98 (From Topology)T: Gle2-binding sequence (GLEBS) of Nup98F: PF21240ECOD (1.6)
CPF06326e4owrC1 A: a+b complex topologyX: VSV matrix protein (From Topology)H: VSV matrix protein (From Topology)T: VSV matrix proteinF: PF06326ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
B1.10.10.2360 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
C3.10.460.10 Alpha Beta Roll VSV matrix protein VSV matrix proteinCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF21240Nup98, Gle2-binding sequence (Nup98_GLEBS)Nup98, Gle2-binding sequenceThis is the Gle2-binding sequence (GLEBS) of Nup98, which forms a hairpin that binds with its C-terminal arm to an essentially invariant hydrophobic surface that extends over the top face of the Rae1 beta-propeller [1]. This interaction is required f ...This is the Gle2-binding sequence (GLEBS) of Nup98, which forms a hairpin that binds with its C-terminal arm to an essentially invariant hydrophobic surface that extends over the top face of the Rae1 beta-propeller [1]. This interaction is required for Rae1 binding. Rae1-Nup98(GLEBS) form a complex with single-stranded RNA-binding capability that directly binds to the mRNP in several steps of the mRNA export pathway [1-3].
Domain
PF06326Vesiculovirus matrix protein (Vesiculo_matrix)Vesiculovirus matrix protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
mRNA export factor
Nuclear pore complex protein Nup98-Nup96
Matrix protein

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
B, C
OPMVesiculovirus matrix protein