4L9M

Autoinhibited state of the Ras-specific exchange factor RasGRP1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	C1 domain	8018933	4003764	SCOP2 (2022-06-29)
A	SCOP2 Family	Ras GEF	8018935	4001268	SCOP2 (2022-06-29)
A	SCOP2 Family	REM (Ras exchange motif)-like	8018966	4000381	SCOP2 (2022-06-29)
A	SCOP2 Family	EF-hand modules in multidomain proteins	8018934	4000949	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cysteine-rich domain	8057958	3001452	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ras GEF	8057956	3000128	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ENTH/VHS domain-like	8057955	3000164	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	EF-hand	8057957	3001983	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EF-hand_7_9	e4l9mA2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_9	ECOD (1.6)
A	RasGEF	e4l9mA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ras GEF (From Topology)	T: Ras GEF	F: RasGEF	ECOD (1.6)
A	C1_1	e4l9mA3	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: Cysteine-rich domain	F: C1_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.870.10	Mainly Alpha	Up-down Bundle	Son of sevenless (SoS) protein	Chain S, domain 1	CATH (4.3.0)
A	1.10.840.10	Mainly Alpha	Orthogonal Bundle	Son of Sevenless (SoS) protein	Chain S, domain 2	CATH (4.3.0)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)
A	3.30.60.20	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00617	RasGEF domain (RasGEF)	RasGEF domain	-	Family
A	PF00618	RasGEF N-terminal motif (RasGEF_N)	RasGEF N-terminal motif	A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this motif/domain N-terminal to the RasGef (Cdc25-like) domain.	Domain
A	PF00130	Phorbol esters/diacylglycerol binding domain (C1 domain) (C1_1)	Phorbol esters/diacylglycerol binding domain (C1 domain)	This domain is also known as the Protein kinase C conserved region 1 (C1) domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	RAS guanyl-releasing protein 1	binding lipid binding diacylglycerol binding cation binding ion binding phosphatidylcholine binding phospholipid binding quaternary ammonium group binding small molecule binding identical protein binding protein binding calcium ion binding metal ion binding GTPase regulator activity binding lipid binding diacylglycerol binding cation binding ion binding phosphatidylcholine binding phospholipid binding quaternary ammonium group binding small molecule binding identical protein binding protein binding calcium ion binding metal ion binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity transition metal ion binding zinc ion binding	vesicle localization localization organelle localization secretory granule localization multicellular organismal process immune system process B cell activation cell activation cellular process lymphocyte activation leukocyte activation cellular response to stimulus positive regulation of cell communication regulation of cellular process vesicle localization localization organelle localization secretory granule localization multicellular organismal process immune system process B cell activation cell activation cellular process lymphocyte activation leukocyte activation cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus positive regulation of JNK cascade regulation of intracellular signal transduction JNK cascade intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of MAPK cascade biological regulation regulation of JNK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication positive regulation of signaling cell population proliferation leukocyte proliferation mononuclear cell proliferation T cell activation lymphocyte proliferation T cell proliferation defense response immune response response to stress inflammatory response inflammatory response to antigenic stimulus natural killer cell activation ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade regulation of immune effector process lymphocyte mediated immunity positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus response to biotic stimulus positive regulation of leukocyte mediated cytotoxicity positive regulation of immune response positive regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity positive regulation of immune system process regulation of natural killer cell mediated immunity response to other organism regulation of innate immune response response to external stimulus leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity defense response to other organism positive regulation of defense response natural killer cell mediated cytotoxicity regulation of immune response positive regulation of natural killer cell mediated cytotoxicity regulation of cell killing positive regulation of cell killing regulation of defense response regulation of response to biotic stimulus regulation of natural killer cell mediated cytotoxicity biological process involved in interspecies interaction between organisms regulation of response to external stimulus positive regulation of lymphocyte mediated immunity positive regulation of response to external stimulus regulation of response to stress innate immune response positive regulation of immune effector process response to external biotic stimulus positive regulation of innate immune response regulation of leukocyte mediated cytotoxicity defense response to symbiont regulation of lymphocyte mediated immunity cell killing developmental process cellular developmental process cell differentiation positive regulation of ERK1 and ERK2 cascade establishment of organelle localization vesicle cytoskeletal trafficking cellular localization organelle transport along microtubule transport establishment of vesicle localization intracellular transport establishment of localization vesicle transport along microtubule establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development T cell differentiation in thymus positive regulation of developmental process multicellular organism development positive regulation of cell activation positive regulation of T cell differentiation in thymus anatomical structure development positive regulation of leukocyte activation T cell differentiation positive regulation of T cell activation positive regulation of cell development regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process leukocyte differentiation regulation of developmental process cell development positive regulation of leukocyte cell-cell adhesion regulation of T cell differentiation in thymus leukocyte cell-cell adhesion positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of hemopoiesis positive regulation of cell differentiation regulation of multicellular organismal process regulation of cell-cell adhesion regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell adhesion regulation of cell adhesion regulation of T cell activation regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation small GTPase-mediated signal transduction Ras protein signal transduction regulation of natural killer cell activation natural killer cell differentiation positive regulation of natural killer cell activation regulation of natural killer cell differentiation positive regulation of natural killer cell differentiation B cell proliferation positive regulation of phosphorylation regulation of transferase activity positive regulation of phosphate metabolic process regulation of MAP kinase activity regulation of primary metabolic process positive regulation of protein serine/threonine kinase activity positive regulation of metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process phosphorus metabolic process protein modification process positive regulation of protein phosphorylation positive regulation of MAP kinase activity protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation cellular metabolic process regulation of protein metabolic process regulation of cellular metabolic process primary metabolic process positive regulation of kinase activity regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorus metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of cellular metabolic process positive regulation of protein modification process organic substance metabolic process protein metabolic process positive regulation of protein kinase activity organonitrogen compound metabolic process positive regulation of transferase activity regulation of protein kinase activity regulation of macromolecule metabolic process regulation of phosphorylation regulated exocytosis cell activation involved in immune response leukocyte degranulation myeloid leukocyte activation myeloid leukocyte mediated immunity vesicle-mediated transport secretion by cell leukocyte activation involved in immune response mast cell activation mast cell mediated immunity secretion vacuolar localization export from cell mast cell degranulation myeloid cell activation involved in immune response mast cell activation involved in immune response exocytosis lysosome localization granulocyte macrophage colony-stimulating factor production cellular biosynthetic process organonitrogen compound biosynthetic process positive regulation of macromolecule biosynthetic process positive regulation of granulocyte macrophage colony-stimulating factor production positive regulation of biosynthetic process cytokine production organic substance biosynthetic process regulation of cytokine production regulation of biosynthetic process regulation of granulocyte macrophage colony-stimulating factor production gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of cytokine production positive regulation of cellular biosynthetic process activation of GTPase activity regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of small GTPase mediated signal transduction regulation of Ras protein signal transduction positive regulation of Ras protein signal transduction positive regulation of small GTPase mediated signal transduction regulation of type II interferon production type II interferon production positive regulation of type II interferon production	membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system Golgi membrane bounding membrane of organelle organelle membrane membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system Golgi membrane bounding membrane of organelle organelle membrane cell periphery plasma membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008937	Ras-like guanine nucleotide exchange factor	Family
A	IPR020454	Diacylglycerol/phorbol-ester binding	Domain
A	IPR002048	EF-hand domain	Domain
A	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A	IPR036964	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Homologous Superfamily
A	IPR023578	Ras guanine nucleotide exchange factor domain superfamily	Homologous Superfamily
A	IPR000651	Ras-like guanine nucleotide exchange factor, N-terminal	Domain
A	IPR001895	Ras guanine-nucleotide exchange factors catalytic domain	Domain
A	IPR011992	EF-hand domain pair	Homologous Superfamily
A	IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Domain
A	IPR046349	C1-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O95267	rheumatoid arthritis systemic lupus erythematosus acute myeloid leukemia endometriosis Libman-Sacks Disease lupus erythematosus malignant glioma medulloblastoma ovarian cancer pilocytic astrocytoma astrocytic tumor bipolar disorder cystic fibrosis Hashimoto thyroiditis invasive ductal breast carcinoma rheumatoid arthritis systemic lupus erythematosus acute myeloid leukemia endometriosis Libman-Sacks Disease lupus erythematosus malignant glioma medulloblastoma ovarian cancer pilocytic astrocytoma astrocytic tumor bipolar disorder cystic fibrosis Hashimoto thyroiditis invasive ductal breast carcinoma lung cancer malignant mesothelioma oligodendroglioma peripheral nervous system disease primitive neuroectodermal tumor atopic eczema sarcoidosis bipolar I disorder type 2 diabetes mellitus Down syndrome hypothyroidism large cell medulloblastoma lung carcinoma malignant ependymoma maturity-onset diabetes of the young osteosarcoma peripheral neuropathy psoriasis atypical teratoid rhabdoid tumor Sjogren syndrome Crohn disease ulcerative colitis endogenous depression glioblastoma interstitial cystitis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM				C1 domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.