4FAP

ATOMIC STRUCTURES OF THE RAPAMYCIN ANALOGS IN COMPLEX WITH BOTH HUMAN FKBP12 AND FRB DOMAIN OF FRAP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4fapa_	Alpha and beta proteins (a+b)	FKBP-like	FKBP-like	FKBP immunophilin/proline isomerase	FK-506 binding protein (FKBP12), an immunophilin	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4fapb_	All alpha proteins	Four-helical up-and-down bundle	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)	mTOR FKBP12–rapamycin-binding (FRB) domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Rotamase-like	8035974	3000622	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)	8036936	3001600	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FKBP_C	e4fapA1	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: FKBP_C	ECOD (1.6)
B	FRB_dom	e4fapB1	A: alpha bundles	X: Four-helical up-and-down bundle	H: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) (From Topology)	T: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)	F: FRB_dom	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.50.40	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
B	1.20.120.150	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	FKBP12-rapamycin binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)	FKBP-type peptidyl-prolyl cis-trans isomerase	-	Domain
B	PF08771	FKBP12-rapamycin binding domain (FRB_dom)	FKBP12-rapamycin binding domain	The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ...	The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapamycin binding domain (FRB) of the TOR proteins. This entry represents the FRB domain [1, 2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	FK506-BINDING PROTEIN	isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity transforming growth factor beta receptor binding protein binding binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding FK506 binding amide binding organic cyclic compound binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity transforming growth factor beta receptor binding protein binding binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding FK506 binding amide binding organic cyclic compound binding macrolide binding activin receptor binding receptor serine/threonine kinase binding transmembrane receptor protein serine/threonine kinase binding transmembrane transporter binding SMAD binding I-SMAD binding molecular function inhibitor activity molecular function regulator activity signaling receptor inhibitor activity signaling receptor regulator activity	protein refolding organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process protein folding biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process metabolic process protein refolding organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process protein folding biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling activin receptor signaling pathway cell surface receptor protein serine/threonine kinase signaling pathway negative regulation of signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process negative regulation of cell communication negative regulation of activin receptor signaling pathway negative regulation of cellular process enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction transforming growth factor beta receptor superfamily signaling pathway regulation of activin receptor signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway amyloid fibril formation cellular component organization cellular component organization or biogenesis supramolecular fiber organization regulation of calcium ion transmembrane transporter activity regulation of calcium ion transport regulation of localization intracellular calcium ion homeostasis calcium ion transport localization monoatomic cation homeostasis monoatomic cation transport intracellular monoatomic ion homeostasis regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport inorganic ion transmembrane transport establishment of localization regulation of cation channel activity inorganic cation transmembrane transport maintenance of location transmembrane transport release of sequestered calcium ion into cytosol regulation of molecular function regulation of transmembrane transport chemical homeostasis cellular localization inorganic ion homeostasis transport homeostatic process monoatomic ion transmembrane transport regulation of transmembrane transporter activity calcium ion homeostasis regulation of monoatomic ion transmembrane transport negative regulation of sequestering of calcium ion metal ion transport maintenance of location in cell regulation of transporter activity regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport intracellular monoatomic cation homeostasis monoatomic ion homeostasis monoatomic ion transport intracellular chemical homeostasis regulation of metal ion transport regulation of sequestering of calcium ion regulation of monoatomic ion transmembrane transporter activity calcium ion transmembrane import into cytosol regulation of transport sequestering of calcium ion regulation of ryanodine-sensitive calcium-release channel activity cellular homeostasis regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport macromolecule modification peptidyl-amino acid modification peptidyl-proline modification protein modification process protein peptidyl-prolyl isomerization amyloid precursor protein catabolic process regulation of protein metabolic process regulation of amyloid precursor protein catabolic process regulation of macromolecule metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process amyloid precursor protein metabolic process regulation of metabolic process immune response immune system process regulation of immune response regulation of immune system process developmental process heart development multicellular organismal process cardiac chamber morphogenesis heart trabecula formation animal organ development heart morphogenesis circulatory system development anatomical structure morphogenesis multicellular organism development anatomical structure development anatomical structure formation involved in morphogenesis cardiac chamber development animal organ morphogenesis heart trabecula morphogenesis trabecula formation trabecula morphogenesis system development T cell activation cell activation lymphocyte activation leukocyte activation protein dephosphorylation regulation of phosphatase activity regulation of catalytic activity negative regulation of catalytic activity negative regulation of nitrogen compound metabolic process negative regulation of cellular metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of dephosphorylation phosphorus metabolic process negative regulation of protein metabolic process regulation of dephosphorylation negative regulation of metabolic process dephosphorylation regulation of cellular metabolic process regulation of hydrolase activity regulation of phosphorus metabolic process negative regulation of hydrolase activity negative regulation of phosphoprotein phosphatase activity negative regulation of protein dephosphorylation regulation of protein modification process negative regulation of phosphate metabolic process regulation of phosphoprotein phosphatase activity negative regulation of phosphatase activity negative regulation of macromolecule metabolic process regulation of protein dephosphorylation negative regulation of molecular function negative regulation of phosphorus metabolic process negative regulation of transforming growth factor beta receptor signaling pathway cellular response to growth factor stimulus cellular response to transforming growth factor beta stimulus regulation of transforming growth factor beta receptor signaling pathway cellular response to endogenous stimulus regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor protein localization regulation of protein localization regulation of cellular localization cellular macromolecule localization macromolecule localization protein maturation by protein folding 'de novo' protein folding ventricular cardiac muscle tissue morphogenesis striated muscle tissue development muscle structure development ventricular cardiac muscle tissue development muscle tissue development muscle organ development cardiac muscle tissue development tissue development muscle tissue morphogenesis tissue morphogenesis cardiac ventricle morphogenesis cardiac muscle tissue morphogenesis cardiac ventricle development muscle organ morphogenesis regulation of protein binding positive regulation of molecular function positive regulation of protein binding regulation of binding positive regulation of binding	membrane-bounded organelle intracellular anatomical structure organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment terminal cisterna organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm membrane-bounded organelle intracellular anatomical structure organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment terminal cisterna organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm membrane Z disc sarcomere I band intracellular non-membrane-bounded organelle contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network sarcoplasmic reticulum membrane organelle membrane endoplasmic reticulum membrane cytoplasmic side of membrane side of membrane cytosol protein-containing complex membrane protein complex ryanodine receptor complex transporter complex cell periphery endoplasmic reticulum protein-containing complex plasma membrane protein complex voltage-gated calcium channel complex plasma membrane cation channel complex transmembrane transporter complex calcium channel complex monoatomic ion channel complex
B	FKBP12-RAPAMYCIN ASSOCIATED PROTEIN	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding sequence-specific DNA binding RNA polymerase III transcription regulatory region sequence-specific DNA binding RNA polymerase III type 2 promoter sequence-specific DNA binding double-stranded DNA binding nucleic acid binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding RNA polymerase III cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups ribonucleoprotein complex binding protein-containing complex binding ribosome binding phosphoprotein binding protein binding rDNA binding 5S rDNA binding RNA polymerase III type 1 promoter sequence-specific DNA binding identical protein binding transcription factor binding TFIIIC-class transcription factor complex binding RNA polymerase III general transcription initiation factor binding general transcription initiation factor binding protein serine kinase activity RNA polymerase III type 3 promoter sequence-specific DNA binding	calcineurin-NFAT signaling cascade cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication calcium-mediated signaling intracellular signaling cassette cellular process signal transduction calcineurin-mediated signaling calcineurin-NFAT signaling cascade cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication calcium-mediated signaling intracellular signaling cassette cellular process signal transduction calcineurin-mediated signaling cellular response to acid chemical cellular response to nitrogen compound cellular response to amino acid stimulus response to organic substance response to organonitrogen compound response to endogenous stimulus response to oxygen-containing compound response to nitrogen compound response to amino acid cellular response to L-leucine cellular response to oxygen-containing compound cellular response to endogenous stimulus response to acid chemical cellular response to chemical stimulus cellular response to organonitrogen compound response to chemical cellular response to organic substance response to L-leucine catabolic process macroautophagy cellular metabolic process autophagy regulation of cellular metabolic process regulation of catabolic process regulation of autophagy cellular catabolic process regulation of macroautophagy regulation of cellular catabolic process metabolic process regulation of metabolic process process utilizing autophagic mechanism regulation of cellular component organization autophagosome organization cellular component biogenesis cellular component organization cellular component assembly cellular component organization or biogenesis autophagosome assembly organelle assembly vacuole organization regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly regulation of cellular component size regulation of biological quality regulation of cell size regulation of anatomical structure size organonitrogen compound catabolic process organonitrogen compound metabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process nitrogen compound metabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process regulation of growth growth regulation of cell growth cell growth TOR signaling TORC1 signaling developmental process heart development multicellular organismal process heart valve development animal organ development circulatory system development multicellular organism development anatomical structure morphogenesis heart valve morphogenesis anatomical structure development system development behavior response to stress multicellular organismal response to stress response to pain behavioral response to pain response to extracellular stimulus response to nutrient levels response to external stimulus cellular response to starvation cellular response to nutrient levels cellular response to stress cellular response to extracellular stimulus response to starvation cellular response to external stimulus cellular developmental process regulation of developmental process positive regulation of biological process regulation of cell differentiation regulation of striated muscle cell differentiation muscle cell differentiation myotube differentiation muscle structure development positive regulation of developmental process positive regulation of myotube differentiation positive regulation of cell differentiation cell differentiation positive regulation of striated muscle cell differentiation regulation of myotube differentiation positive regulation of cellular process positive regulation of muscle cell differentiation regulation of muscle cell differentiation striated muscle cell differentiation protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein modification process phosphorus metabolic process positive regulation of locomotion regulation of cell motility regulation of keratinocyte migration positive regulation of cell migration positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration positive regulation of cell motility regulation of cell migration cell migration regulation of multicellular organismal process epithelial cell migration cell motility regulation of epithelial cell migration locomotion epithelium migration regulation of locomotion positive regulation of keratinocyte migration keratinocyte migration negative regulation of cellular catabolic process negative regulation of catabolic process negative regulation of metabolic process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of autophagy negative regulation of cellular process response to osmotic stress cellular response to chemical stress cellular response to osmotic stress cellular response to environmental stimulus response to abiotic stimulus cellular response to abiotic stimulus cellular biosynthetic process positive regulation of protein metabolic process organonitrogen compound biosynthetic process positive regulation of translation positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process regulation of nitrogen compound metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process translational initiation regulation of biosynthetic process regulation of translational initiation regulation of protein metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of nitrogen compound metabolic process positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process positive regulation of translational initiation positive regulation of cellular biosynthetic process multicellular organism growth developmental growth anoikis apoptotic process cell death programmed cell death negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction negative regulation of cell communication negative regulation of calcineurin-NFAT signaling cascade regulation of intracellular signal transduction regulation of calcineurin-mediated signaling regulation of calcium-mediated signaling regulation of calcineurin-NFAT signaling cascade regulation of signaling negative regulation of response to stimulus negative regulation of calcium-mediated signaling negative regulation of signal transduction regulation of response to stimulus regulation of cell communication negative regulation of calcineurin-mediated signaling response to heat response to temperature stimulus positive regulation of cell growth positive regulation of growth pyridine nucleotide catabolic process oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process organic acid metabolic process regulation of ATP metabolic process regulation of purine nucleotide catabolic process heterocycle metabolic process regulation of small molecule metabolic process regulation of phosphate metabolic process regulation of nucleotide metabolic process small molecule metabolic process purine ribonucleotide catabolic process nucleoside phosphate metabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process cellular nitrogen compound metabolic process purine-containing compound catabolic process regulation of purine nucleotide metabolic process cellular nitrogen compound catabolic process nucleobase-containing compound catabolic process positive regulation of ATP metabolic process nucleoside diphosphate metabolic process heterocycle catabolic process regulation of phosphorus metabolic process positive regulation of carbohydrate metabolic process monocarboxylic acid metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process ATP metabolic process positive regulation of purine nucleotide catabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process positive regulation of glycolytic process organic cyclic compound catabolic process purine-containing compound metabolic process positive regulation of catabolic process ADP metabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleoside diphosphate catabolic process cellular aromatic compound metabolic process ribonucleotide catabolic process positive regulation of phosphate metabolic process nucleobase-containing compound metabolic process positive regulation of nucleotide catabolic process glycolytic process pyridine-containing compound metabolic process regulation of nucleobase-containing compound metabolic process pyridine nucleotide metabolic process nicotinamide nucleotide metabolic process regulation of carbohydrate catabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of phosphorus metabolic process aromatic compound catabolic process nucleotide metabolic process organic cyclic compound metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process positive regulation of nucleotide metabolic process purine nucleotide metabolic process ribonucleotide metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process ribonucleoside triphosphate metabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process carbohydrate metabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy regulation of glycolytic process positive regulation of purine nucleotide metabolic process organophosphate metabolic process positive regulation of cellular catabolic process positive regulation of small molecule metabolic process voluntary musculoskeletal movement multicellular organismal movement musculoskeletal movement system process nervous system process neuromuscular process sexual reproduction reproductive process multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation germ cell development rhythmic process circadian rhythm regulation of circadian rhythm negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death negative regulation of apoptotic process regulation of epithelial to mesenchymal transition positive regulation of epithelial to mesenchymal transition mesenchyme development tissue development epithelial to mesenchymal transition positive regulation of multicellular organismal process mesenchymal cell differentiation regulation of cytoskeleton organization regulation of actin filament-based process actin cytoskeleton organization regulation of actin cytoskeleton organization actin filament-based process cytoskeleton organization myeloid leukocyte differentiation regulation of leukocyte differentiation regulation of cell development regulation of osteoclast differentiation osteoclast differentiation regulation of immune system process regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation regulation of myeloid leukocyte differentiation myeloid cell differentiation immune system process regulation of hemopoiesis leukocyte differentiation positive regulation of organelle organization positive regulation of cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of protein polymerization protein-containing complex assembly regulation of actin filament polymerization protein polymerization actin polymerization or depolymerization regulation of actin filament organization actin filament polymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization actin filament organization regulation of actin polymerization or depolymerization positive regulation of supramolecular fiber organization regulation of protein polymerization regulation of actin filament length regulation of supramolecular fiber organization supramolecular fiber organization positive regulation of actin filament polymerization cardiac muscle cell development striated muscle tissue development muscle cell development cardiac cell development muscle tissue development cardiac muscle tissue development cardiac muscle cell differentiation cardiocyte differentiation heart process circulatory system process cardiac muscle contraction heart contraction muscle contraction muscle system process blood circulation striated muscle contraction cellular nitrogen compound biosynthetic process nucleobase metabolic process pyrimidine-containing compound biosynthetic process pyrimidine-containing compound metabolic process nucleobase biosynthetic process pyrimidine nucleobase biosynthetic process heterocycle biosynthetic process pyrimidine nucleobase metabolic process organic cyclic compound biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process defense response inflammatory response signal transduction by p53 class mediator regulation of signal transduction by p53 class mediator response to peptide hormone cellular response to peptide hormone stimulus response to hormone response to insulin cellular response to insulin stimulus cellular response to hormone stimulus protein localization regulation of localization cellular localization regulation of protein localization regulation of protein localization to nucleus protein localization to nucleus negative regulation of protein localization to nucleus localization regulation of cellular localization cellular macromolecule localization macromolecule localization protein localization to organelle negative regulation of protein localization regulation of ncRNA transcription DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase I rRNA transcription regulation of transcription by RNA polymerase I positive regulation of RNA metabolic process aromatic compound biosynthetic process regulation of DNA-templated transcription regulation of transcription of nucleolar large rRNA by RNA polymerase I positive regulation of DNA-templated transcription RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process rRNA metabolic process positive regulation of transcription by RNA polymerase I regulation of RNA biosynthetic process nucleolar large rRNA transcription by RNA polymerase I ncRNA transcription nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA biosynthetic process ncRNA metabolic process positive regulation of transcription of nucleolar large rRNA by RNA polymerase I cell projection organization plasma membrane bounded cell projection assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly regulation of actin filament bundle assembly positive regulation of actin filament bundle assembly actin filament bundle organization positive regulation of stress fiber assembly stress fiber assembly actomyosin structure organization regulation of stress fiber assembly contractile actin filament bundle assembly regulation of actomyosin structure organization actin filament bundle assembly negative regulation of cell size regulation of protein modification process positive regulation of phosphorylation regulation of protein phosphorylation peptidyl-tyrosine modification positive regulation of peptidyl-tyrosine phosphorylation positive regulation of protein modification process peptidyl-amino acid modification positive regulation of protein phosphorylation regulation of peptidyl-tyrosine phosphorylation regulation of phosphorylation peptidyl-tyrosine phosphorylation DNA damage response response to nutrient cellular response to nutrient positive regulation of phosphoprotein phosphatase activity protein dephosphorylation regulation of phosphatase activity regulation of catalytic activity positive regulation of phosphatase activity positive regulation of dephosphorylation regulation of dephosphorylation dephosphorylation regulation of molecular function regulation of hydrolase activity regulation of phosphoprotein phosphatase activity positive regulation of molecular function regulation of protein dephosphorylation positive regulation of catalytic activity positive regulation of protein dephosphorylation positive regulation of hydrolase activity protein destabilization regulation of protein stability response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels response to hypoxia response to oxygen levels regulation of amide metabolic process regulation of pentose-phosphate shunt pentose-phosphate shunt positive regulation of pentose-phosphate shunt glucose 6-phosphate metabolic process regulation of NADP metabolic process amide metabolic process NADP metabolic process NADPH regeneration protein autophosphorylation heart morphogenesis animal organ morphogenesis ruffle organization peptidyl-serine modification peptidyl-serine phosphorylation regulation of leukocyte activation regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation positive regulation of leukocyte activation regulation of cell-cell adhesion positive regulation of immune system process positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation lymphocyte costimulation regulation of leukocyte cell-cell adhesion T cell costimulation regulation of lymphocyte activation cellular response to amino acid starvation response to amino acid starvation cellular response to heat regulation of cellular response to heat regulation of cellular response to stress regulation of response to stress negative regulation of lysosome organization negative regulation of cellular component organization lytic vacuole organization lysosome organization negative regulation of organelle organization regulation of lysosome organization regulation of myelination nervous system development regulation of nervous system development myelination axon ensheathment ensheathment of neurons neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cellular response to leucine starvation negative regulation of macroautophagy positive regulation of cytoplasmic translational initiation regulation of cytoplasmic translation regulation of cytoplasmic translational initiation cytoplasmic translation cytoplasmic translational initiation regulation of response to wounding positive regulation of response to stimulus response to wounding regulation of wound healing, spreading of epidermal cells positive regulation of response to wounding wound healing epithelium development positive regulation of wound healing, spreading of epidermal cells morphogenesis of an epithelium epiboly involved in wound healing morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis positive regulation of wound healing regulation of wound healing epiboly wound healing, spreading of cells regulation of lipid metabolic process lipid biosynthetic process positive regulation of lipid biosynthetic process positive regulation of lipid metabolic process regulation of lipid biosynthetic process lipid metabolic process positive regulation of cell communication regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signal transduction positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signaling energy derivation by oxidation of organic compounds energy reserve metabolic process organelle localization nucleus localization action potential transmission of nerve impulse neuronal action potential regulation of membrane potential rhythmic behavior regulation of behavior circadian behavior locomotory behavior regulation of locomotor rhythm locomotor rhythm adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains CD4-positive or CD8-positive, alpha-beta T cell lineage commitment T-helper 1 cell lineage commitment mononuclear cell differentiation lymphocyte differentiation cell activation involved in immune response CD4-positive, alpha-beta T cell differentiation CD4-positive, alpha-beta T cell differentiation involved in immune response alpha-beta T cell differentiation involved in immune response alpha-beta T cell differentiation T cell activation involved in immune response alpha-beta T cell activation involved in immune response CD4-positive, alpha-beta T cell activation leukocyte activation involved in immune response alpha-beta T cell activation T cell differentiation CD4-positive, alpha-beta T cell lineage commitment lymphocyte activation involved in immune response T-helper cell differentiation immune response alpha-beta T cell lineage commitment T cell differentiation involved in immune response T-helper 1 type immune response T-helper cell lineage commitment T cell lineage commitment adaptive immune response immune effector process positive T cell selection T-helper 1 cell differentiation T cell selection cell fate commitment regulation of transcription by RNA polymerase III positive regulation of transcription by RNA polymerase III transcription by RNA polymerase III positive regulation of nervous system development regulation of neurogenesis regulation of gliogenesis positive regulation of gliogenesis positive regulation of neurogenesis positive regulation of oligodendrocyte differentiation regulation of glial cell differentiation positive regulation of cell development positive regulation of glial cell differentiation regulation of oligodendrocyte differentiation post-embryonic development regulation of membrane permeability	membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytoplasm cytosol Golgi membrane Golgi apparatus membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytoplasm cytosol Golgi membrane Golgi apparatus membrane bounding membrane of organelle organelle membrane protein-containing complex TORC1 complex TOR complex intracellular protein-containing complex intracellular vesicle phagocytic vesicle cytoplasmic vesicle vesicle endocytic vesicle lytic vacuole vacuole lysosome organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection vacuolar membrane lytic vacuole membrane lysosomal membrane mitochondrial membrane mitochondrion organelle outer membrane mitochondrial envelope mitochondrial outer membrane outer membrane membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen TORC2 complex nuclear body PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily	Homologous Superfamily
A	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Domain
B	IPR016024	Armadillo-type fold	Homologous Superfamily
B	IPR009076	FKBP12-rapamycin binding domain	Domain
B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
B	IPR018936	Phosphatidylinositol 3/4-kinase, conserved site	Conserved Site
B	IPR036940	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Homologous Superfamily
B	IPR014009	PIK-related kinase	Domain
B	IPR026683	Serine/threonine-protein kinase TOR, catalytic domain	Domain
B	IPR003151	PIK-related kinase, FAT	Domain
B	IPR036738	FKBP12-rapamycin binding domain superfamily	Homologous Superfamily
B	IPR003152	FATC domain	Domain
B	IPR024585	Serine/threonine-protein kinase mTOR domain	Domain
B	IPR011989	Armadillo-like helical	Homologous Superfamily
B	IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain	Domain
B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P62942	esophageal squamous cell carcinoma Liver Cirrhosis, Experimental medulloblastoma Pick disease renal cell carcinoma astrocytic tumor breast carcinoma lymphangioma malignant mesothelioma osteosarcoma atopic eczema tuberculosis cystic fibrosis glioblastoma kidney angiomyolipoma esophageal squamous cell carcinoma Liver Cirrhosis, Experimental medulloblastoma Pick disease renal cell carcinoma astrocytic tumor breast carcinoma lymphangioma malignant mesothelioma osteosarcoma atopic eczema tuberculosis cystic fibrosis glioblastoma kidney angiomyolipoma lung lymphangioleiomyomatosis mantle cell lymphoma psoriasis bipolar disorder tuberous sclerosis disappearing bone disease malignant glioma
B	Pharos: P42345	renal cell carcinoma mantle cell lymphoma Precursor T-Cell Lymphoblastic Leukemia-Lymphoma sarcomatoid renal cell carcinoma chromophobe renal cell carcinoma macrocephaly-intellectual disability-neurodevelopmental disorder-small thorax syndrome adenocarcinoma granular cell carcinoma hypertensive disorder schizophrenia intellectual disability tubular adenocarcinoma papillary renal cell carcinoma cancer isolated focal cortical dysplasia type II renal cell carcinoma mantle cell lymphoma Precursor T-Cell Lymphoblastic Leukemia-Lymphoma sarcomatoid renal cell carcinoma chromophobe renal cell carcinoma macrocephaly-intellectual disability-neurodevelopmental disorder-small thorax syndrome adenocarcinoma granular cell carcinoma hypertensive disorder schizophrenia intellectual disability tubular adenocarcinoma papillary renal cell carcinoma cancer isolated focal cortical dysplasia type II cervical cancer collecting duct carcinoma cribriform carcinoma of breast epilepsy ovarian mucinous adenocarcinoma acute T cell leukemia glioblastoma hyperglycemia bladder carcinoma in situ inborn carbohydrate metabolic disorder small cell lung carcinoma kidney disease liver disease toxic encephalopathy connective tissue disease urinary bladder neoplasm mesothelioma obesity disorder ovarian neoplasm renal carcinoma benign mesothelioma breast disease thyroid gland carcinoma cerebral cortical dysplasia lung disease clear cell renal carcinoma lymphatic system disease urinary bladder cancer major depressive disorder cribriform carcinoma metastatic melanoma neurodegenerative disease ovarian cancer hepatocellular carcinoma bladder benign neoplasm small cell carcinoma lung large cell carcinoma type 2 diabetes mellitus urinary bladder carcinoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.