4F1E

The Crystal Structure of a Human MitoNEET mutant with Asp 67 replaced by a Gly

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4f1ea_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4f1eb_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4f1ec_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4f1ed_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d4f1ee_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4f1ef_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d4f1eg_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d4f1eh_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d4f1ei_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
J	d4f1ej_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K	d4f1ek_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
M	d4f1em_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
O	d4f1eo_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
P	d4f1ep_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
R	d4f1er_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
L	d4f1el_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
N	d4f1en_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
Q	d4f1eq_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-CDGSH_1	e4f1eA2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
B	zf-CDGSH_1	e4f1eB2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
C	zf-CDGSH_1	e4f1eC2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
D	zf-CDGSH_1	e4f1eD2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
E	zf-CDGSH_1	e4f1eE2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
F	zf-CDGSH_1	e4f1eF2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
G	zf-CDGSH_1	e4f1eG2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
H	zf-CDGSH_1	e4f1eH2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
I	zf-CDGSH_1	e4f1eI2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
J	zf-CDGSH_1	e4f1eJ2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
K	zf-CDGSH_1	e4f1eK2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
M	zf-CDGSH_1	e4f1eM2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
O	zf-CDGSH_1	e4f1eO2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
P	zf-CDGSH_1	e4f1eP2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
R	zf-CDGSH_1	e4f1eR2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
L	zf-CDGSH_1	e4f1eL2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
N	zf-CDGSH_1	e4f1eN2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)
Q	zf-CDGSH_1	e4f1eQ2	A: few secondary structure elements	X: CDGSH iron-sulfur domains (From Homology)	H: CDGSH iron-sulfur domains	T: Type 1 and 2	F: zf-CDGSH_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
B	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
C	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
D	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
E	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
F	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
G	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
H	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
I	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
J	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
K	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
M	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
O	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
P	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
R	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
L	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
N	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
Q	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PF10660	Iron-containing outer mitochondrial membrane protein N-terminus (MitoNEET_N)	Iron-containing outer mitochondrial membrane protein N-terminus	MitoNEET_N is the N-terminal region of the MitoNEET and Miner-type proteins that carry a zf-CDGSH, Pfam:PF09360, redox-active 2Fe-2S cluster. The whole protein regulates oxidative capacity. The domain is an anchor sequence that tethers the protein t ...	MitoNEET_N is the N-terminal region of the MitoNEET and Miner-type proteins that carry a zf-CDGSH, Pfam:PF09360, redox-active 2Fe-2S cluster. The whole protein regulates oxidative capacity. The domain is an anchor sequence that tethers the protein to the outer membrane.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PF09360	Iron-binding zinc finger CDGSH type (zf-CDGSH)	Iron-binding zinc finger CDGSH type	The CDGSH-type zinc finger domain binds iron rather than zinc as a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family [1]. The domain is oriented towards the cytopl ...	The CDGSH-type zinc finger domain binds iron rather than zinc as a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family [1]. The domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, MitoNEET_N, Pfam:PF10660 [2]. The domain forms a uniquely folded homo-dimer and spans the outer mitochondrial membrane, orienting the iron-binding residues towards the cytoplasm [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	CDGSH iron-sulfur domain-containing protein 1	transferase activity, transferring nitrogenous groups transaminase activity L-cysteine transaminase activity transferase activity catalytic activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal cluster binding small molecule binding transferase activity, transferring nitrogenous groups transaminase activity L-cysteine transaminase activity transferase activity catalytic activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal cluster binding small molecule binding vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding organic cyclic compound binding anion binding heterocyclic compound binding cation binding metal ion binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process protein maturation by [2Fe-2S] cluster transfer gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process biosynthetic process protein maturation by iron-sulfur cluster transfer organic substance biosynthetic process nitrogen compound metabolic process metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process protein maturation by [2Fe-2S] cluster transfer gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process biosynthetic process protein maturation by iron-sulfur cluster transfer organic substance biosynthetic process nitrogen compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of biological process catabolic process regulation of cellular process biological regulation autophagy regulation of cellular metabolic process regulation of catabolic process regulation of autophagy cellular catabolic process regulation of cellular catabolic process regulation of metabolic process process utilizing autophagic mechanism cellular respiration energy derivation by oxidation of organic compounds regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of cellular respiration	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR018967	Iron-binding zinc finger, CDGSH type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR019610	Iron sulphur domain-containing, mitoNEET, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR045131	CDGSH iron-sulfur domain-containing protein 1/2	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR042216	MitoNEET, CDGSH iron-sulfur domain	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	Pharos: Q9NZ45	primitive neuroectodermal tumor Treatment Refractory Type 2 Diabetes Mellitus acute myeloid leukemia breast cancer glioblastoma large cell medulloblastoma malignant ependymoma Pick disease type 2 diabetes mellitus astrocytic tumor Crohn disease inflammatory bowel disease lung cancer malignant glioma polycystic ovary syndrome primitive neuroectodermal tumor Treatment Refractory Type 2 Diabetes Mellitus acute myeloid leukemia breast cancer glioblastoma large cell medulloblastoma malignant ependymoma Pick disease type 2 diabetes mellitus astrocytic tumor Crohn disease inflammatory bowel disease lung cancer malignant glioma polycystic ovary syndrome atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy lung carcinoma medulloblastoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.