Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyCytochrome c8068519 3000815 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyCytochrome c8068519 3000815 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyCytochrome c8068519 3000815 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCytochrome c8068519 3000815 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyCytochrome c8068519 3000815 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyCytochrome c8068519 3000815 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyCytochrome c8068519 3000815 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AANAPC4_WD40_10e3j2tA7 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
AANAPC4_WD40_10e3j2tA8 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_10ECOD (1.6)
AKOG4658_likee3j2tA6 A: alpha arraysX: HTHH: HTHT: wingedF: KOG4658_likeECOD (1.6)
ANB-ARC_2nde3j2tA4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: NB-ARC_2ndECOD (1.6)
AEUF08240e3j2tA1 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: EUF08240ECOD (1.6)
ANB-ARC_1ste3j2tA5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NB-ARC_1stECOD (1.6)
DANAPC4_WD40_10e3j2tD7 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
DANAPC4_WD40_10e3j2tD8 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_10ECOD (1.6)
DKOG4658_likee3j2tD3 A: alpha arraysX: HTHH: HTHT: wingedF: KOG4658_likeECOD (1.6)
DNB-ARC_2nde3j2tD5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: NB-ARC_2ndECOD (1.6)
DEUF08240e3j2tD1 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: EUF08240ECOD (1.6)
DNB-ARC_1ste3j2tD6 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NB-ARC_1stECOD (1.6)
FANAPC4_WD40_10e3j2tF7 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
FANAPC4_WD40_10e3j2tF8 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_10ECOD (1.6)
FKOG4658_likee3j2tF5 A: alpha arraysX: HTHH: HTHT: wingedF: KOG4658_likeECOD (1.6)
FNB-ARC_2nde3j2tF4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: NB-ARC_2ndECOD (1.6)
FEUF08240e3j2tF2 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: EUF08240ECOD (1.6)
FNB-ARC_1ste3j2tF6 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NB-ARC_1stECOD (1.6)
GANAPC4_WD40_10e3j2tG7 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
GANAPC4_WD40_10e3j2tG8 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_10ECOD (1.6)
GKOG4658_likee3j2tG5 A: alpha arraysX: HTHH: HTHT: wingedF: KOG4658_likeECOD (1.6)
GNB-ARC_2nde3j2tG6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: NB-ARC_2ndECOD (1.6)
GEUF08240e3j2tG1 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: EUF08240ECOD (1.6)
GNB-ARC_1ste3j2tG2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NB-ARC_1stECOD (1.6)
BANAPC4_WD40_10e3j2tB5 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
BANAPC4_WD40_10e3j2tB7 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_10ECOD (1.6)
BKOG4658_likee3j2tB6 A: alpha arraysX: HTHH: HTHT: wingedF: KOG4658_likeECOD (1.6)
BNB-ARC_2nde3j2tB2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: NB-ARC_2ndECOD (1.6)
BEUF08240e3j2tB4 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: EUF08240ECOD (1.6)
BNB-ARC_1ste3j2tB3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NB-ARC_1stECOD (1.6)
CANAPC4_WD40_10e3j2tC5 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
CANAPC4_WD40_10e3j2tC7 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_10ECOD (1.6)
CKOG4658_likee3j2tC4 A: alpha arraysX: HTHH: HTHT: wingedF: KOG4658_likeECOD (1.6)
CNB-ARC_2nde3j2tC2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: NB-ARC_2ndECOD (1.6)
CEUF08240e3j2tC3 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: EUF08240ECOD (1.6)
CNB-ARC_1ste3j2tC6 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NB-ARC_1stECOD (1.6)
EANAPC4_WD40_10e3j2tE6 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
EANAPC4_WD40_10e3j2tE7 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_10ECOD (1.6)
EKOG4658_likee3j2tE2 A: alpha arraysX: HTHH: HTHT: wingedF: KOG4658_likeECOD (1.6)
ENB-ARC_2nde3j2tE5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: NB-ARC_2ndECOD (1.6)
EEUF08240e3j2tE1 A: alpha superhelicesX: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)T: Apoptotic protease-activating factor 1 (Apaf-1) helical domainF: EUF08240ECOD (1.6)
ENB-ARC_1ste3j2tE3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NB-ARC_1stECOD (1.6)
HCytochrom_C_1e3j2tH1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C_1ECOD (1.6)
ICytochrom_C_1e3j2tI1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C_1ECOD (1.6)
JCytochrom_C_1e3j2tJ1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C_1ECOD (1.6)
MCytochrom_C_1e3j2tM1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C_1ECOD (1.6)
KCytochrom_C_1e3j2tK1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C_1ECOD (1.6)
LCytochrom_C_1e3j2tL1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C_1ECOD (1.6)
NCytochrom_C_1e3j2tN1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00931NB-ARC domain (NB-ARC)NB-ARC domain- Domain
A, B, C, D, E
PF21296Apoptotic protease-activating factor 1-like, winged-helix domain (APAF-1-like_WHD)Apoptotic protease-activating factor 1-like, winged-helix domainThis domain is found in Apoptotic protease-activating factor 1 from Mus musculus (APAF-1), responsible to ignite the downstream cascade of caspases in the mitochondrial pathway of apoptosis. This entry represents the winged-helix domain (WHD) [1-5].Domain
A, B, C, D, E
PF17908APAF-1 helical domain (APAF1_C)APAF-1 helical domainThis domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein.Domain
A, B, C, D, E
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
H, I, J, K, L
PF00034Cytochrome c (Cytochrom_C)Cytochrome cThe Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Apoptotic protease-activating factor 1
H, I, J, K, L
Cytochrome c

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR019775WD40 repeat, conserved siteConserved Site
A, B, C, D, E
IPR037963Apoptotic Protease-Activating Factor 1, CARD domainDomain
A, B, C, D, E
IPR002182NB-ARCDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR042197Apoptotic protease-activating factors, helical domainHomologous Superfamily
A, B, C, D, E
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR048975Apoptotic protease-activating factor 1, winged-helix domainDomain
A, B, C, D, E
IPR020472G-protein beta WD-40 repeatRepeat
A, B, C, D, E
IPR017251Apoptotic protease-activating factor 1Family
A, B, C, D, E
IPR041452APAF-1 helical domainDomain
A, B, C, D, E
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR011029Death-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR001680WD40 repeatRepeat
A, B, C, D, E
IPR001315CARD domainDomain
H, I, J, K, L
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
H, I, J, K, L
IPR009056Cytochrome c-like domainDomain
H, I, J, K, L
IPR002327Cytochrome c, class IA/ IBFamily