2YPA
Structure of the SCL:E47:LMO2:LDB1 complex bound to DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | HLH helix-loop-helix DNA-binding domain | 8076574 | 3001962 | SCOP2B (2022-06-29) |
B | SCOP2 Family | HLH helix-loop-helix DNA-binding domain | 8076577 | 4000913 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | HLH helix-loop-helix DNA-binding domain | 8076578 | 3001962 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HLH | e2ypaA1 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: HLH | ECOD (1.6) |
B | HLH | e2ypaB1 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: HLH | ECOD (1.6) |
C | LIM_C | e2ypaC4 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: LIM_C | ECOD (1.6) |
C | LIM_N_1 | e2ypaC2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: LIM_N_1 | ECOD (1.6) |
C | LIM_N_3 | e2ypaC1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: LIM_N_3 | ECOD (1.6) |
C | LIM_C_3 | e2ypaC3 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: LIM_C_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 4.10.280.10 | Few Secondary Structures | Irregular | MYOD Basic-Helix-Loop-Helix Domain, subunit B | Helix-loop-helix DNA-binding domain | CATH (4.3.0) |
B | 4.10.280.10 | Few Secondary Structures | Irregular | MYOD Basic-Helix-Loop-Helix Domain, subunit B | Helix-loop-helix DNA-binding domain | CATH (4.3.0) |
C | 2.10.110.10 | Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain | |
PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain | |
PF00412 | LIM domain (LIM) | LIM domain | This family represents two copies of the LIM structural domain. | Domain | |
PF17916 | LIM interaction domain (LID) (LID) | LIM interaction domain (LID) | LIM-homeodomain (LIM-HD) proteins are transcription factors that are critical in the development of many cell types and tissues. The activity of LIM-HD proteins is dependent on the essential cofactor LIM domain-binding protein 1 (Ldb1). This entry re ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR040238 | Helix-loop-helix protein TAL-like | Family | |
IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | Domain | |
IPR036638 | Helix-loop-helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | Domain | |
IPR036638 | Helix-loop-helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR001781 | Zinc finger, LIM-type | Domain | |
IPR029005 | LIM-domain binding protein/SEUSS | Family | |
IPR041363 | LIM interaction domain | Domain |