2N1G

Structure of C-terminal domain of human polymerase Rev1 in complex with PolD3 RIR-motif

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DNA repair protein REV1 C-terminal domain-like	8091495	3002514	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e2n1gA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: DNA repair protein Rev1 C-terminal domain (From Topology)	T: DNA repair protein Rev1 C-terminal domain	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.58.1280	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16727	DNA repair protein REV1 C-terminal domain (REV1_C)	DNA repair protein REV1 C-terminal domain	This is the C-terminal domain of DNA repair protein REV1. It interacts with REV7, POLN, POLK and POLI [1-2].	Domain
B	PF09507	DNA polymerase subunit Cdc27 (CDC27)	DNA polymerase subunit Cdc27	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DNA repair protein REV1	deoxycytidyl transferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid DNA binding binding organic cyclic compound binding damaged DNA binding nucleic acid binding deoxycytidyl transferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid DNA binding binding organic cyclic compound binding damaged DNA binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication organic substance metabolic process heterocycle metabolic process nitrogen compound metabolic process metabolic process cellular process macromolecule metabolic process cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication organic substance metabolic process heterocycle metabolic process nitrogen compound metabolic process metabolic process cellular process macromolecule metabolic process cellular aromatic compound metabolic process cellular response to stimulus postreplication repair response to stimulus cellular biosynthetic process DNA synthesis involved in DNA repair nucleic acid biosynthetic process cellular response to stress response to stress organic substance biosynthetic process DNA repair translesion synthesis nucleobase-containing compound biosynthetic process heterocycle biosynthetic process macromolecule biosynthetic process biosynthetic process DNA damage response aromatic compound biosynthetic process organic cyclic compound biosynthetic process error-prone translesion synthesis DNA biosynthetic process response to light stimulus response to radiation response to abiotic stimulus response to UV error-free translesion synthesis	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
B	DNA polymerase delta subunit 3	protein-macromolecule adaptor activity molecular adaptor activity	cellular biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process heterocycle metabolic process organic substance biosynthetic process nitrogen compound metabolic process cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process macromolecule biosynthetic process cellular biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process heterocycle metabolic process organic substance biosynthetic process nitrogen compound metabolic process cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process aromatic compound biosynthetic process organic cyclic compound biosynthetic process metabolic process cellular process macromolecule metabolic process DNA biosynthetic process cellular aromatic compound metabolic process DNA-templated DNA replication DNA strand elongation DNA replication DNA strand elongation involved in DNA replication cellular response to stimulus postreplication repair response to stimulus DNA synthesis involved in DNA repair cellular response to stress response to stress DNA repair translesion synthesis DNA damage response error-prone translesion synthesis mismatch repair nucleotide-excision repair, DNA gap filling nucleotide-excision repair response to light stimulus cellular response to environmental stimulus cellular response to light stimulus cellular response to radiation response to UV UV-damage excision repair response to radiation response to abiotic stimulus cellular response to abiotic stimulus cellular response to UV DNA synthesis involved in UV-damage excision repair	transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex zeta DNA polymerase complex transferase complex DNA polymerase complex intracellular protein-containing complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex zeta DNA polymerase complex transferase complex DNA polymerase complex intracellular protein-containing complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle nuclear replisome replication fork non-membrane-bounded organelle delta DNA polymerase complex protein-DNA complex nuclear replication fork intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen replisome cytoplasm nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR047346	DNA repair protein REV1, ubiquitin-binding motif 1/2	Conserved Site
A	IPR031991	DNA repair protein Rev1, C-terminal	Domain
A	IPR001126	UmuC domain	Domain
A	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A	IPR036775	DNA polymerase, Y-family, little finger domain superfamily	Homologous Superfamily
A	IPR012112	DNA repair protein Rev1	Family
A	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A	IPR025527	HUWE1/REV1, ubiquitin-binding motif	Conserved Site
A	IPR038401	Rev1, C-terminal domain superfamily	Homologous Superfamily
A	IPR001357	BRCT domain	Domain
A	IPR017961	DNA polymerase, Y-family, little finger domain	Domain
A	IPR036420	BRCT domain superfamily	Homologous Superfamily
B	IPR019038	DNA polymerase delta subunit 3	Family
B	IPR041913	DNA polymerase delta subunit 3 superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9UBZ9	attention deficit hyperactivity disorder, inattentive type osteosarcoma pancreatic intraductal papillary-mucinous neoplasm xeroderma pigmentosum brucellosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia large cell medulloblastoma pancreatic intraductal papillary-mucinous carcinoma rheumatoid arthritis
B	Pharos: Q15054	colorectal cancer colorectal adenoma Colorectal Neoplasms malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia gastric carcinoma medulloblastoma colorectal carcinoma malignant ependymoma pancreatic intraductal papillary-mucinous neoplasm

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.