1ZGY

Structural and Biochemical Basis for Selective Repression of the Orphan Nuclear Receptor LRH-1 by SHP

Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species
A	d1zgya_	All alpha proteins	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	automated matches	(Homo sapiens ) [TaxId: 9606 ]

Domain Annotation: CATH CATH Database (version 4.2.0) Homepage

Chain	Domain	Class	Architecture	Topology	Homology
A	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Identifier	Description	Comments	Source
A	PF00105	Zinc finger, C4 type (two domains) (zf-C4)	Zinc finger, C4 type (two domains)	In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other.	Domain
A	PF12577	PPAR gamma N-terminal region (PPARgamma_N)	PPAR gamma N-terminal region	-	Family
A	PF00104	Ligand-binding domain of nuclear hormone receptor (Hormone_recep)	Ligand-binding domain of nuclear hormone receptor	This all helical domain is involved in binding the hormone in these receptors.	Domain
B	PF00104	Ligand-binding domain of nuclear hormone receptor (Hormone_recep)	Ligand-binding domain of nuclear hormone receptor	This all helical domain is involved in binding the hormone in these receptors.	Domain

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Peroxisome proliferator activated receptor gamma	binding protein binding transcription factor binding activating transcription factor binding DNA-binding transcription factor binding cytoskeletal protein binding actinin binding alpha-actinin binding fatty acid binding lipid binding carboxylic acid binding monocarboxylic acid binding long-chain fatty acid binding small molecule binding ion binding anion binding organic acid binding icosanoid binding icosatetraenoic acid binding arachidonic acid binding chromatin binding nucleic acid binding DNA binding organic cyclic compound binding heterocyclic compound binding protein domain specific binding DNA binding domain binding DNA-binding transcription factor activity transcription regulator activity double-stranded DNA binding drug binding enzyme binding signaling receptor binding nuclear receptor binding estrogen receptor binding nuclear hormone receptor binding steroid hormone receptor binding hormone receptor binding RNA polymerase II-specific DNA-binding transcription factor binding identical protein binding LBD domain binding amide binding peptide binding transmembrane signaling receptor activity G protein-coupled receptor activity icosanoid receptor activity prostanoid receptor activity prostaglandin receptor activity signaling receptor activity molecular transducer activity protein C-terminus binding phosphatase binding protein phosphatase binding protein self-association retinoic acid receptor binding retinoid X receptor binding zinc ion binding cation binding metal ion binding transition metal ion binding	cellular process cell differentiation developmental process cellular developmental process cell fate commitment developmental maturation cell development cell maturation anatomical structure development anatomical structure maturation response to endogenous stimulus response to hormone response to organic substance response to organonitrogen compound response to insulin cellular response to insulin stimulus cellular response to hormone stimulus response to chemical response to peptide hormone response to stimulus cellular response to stimulus cellular response to chemical stimulus cellular response to organic substance cellular response to peptide hormone stimulus cellular response to organonitrogen compound cellular response to endogenous stimulus response to peptide cellular response to peptide response to nitrogen compound cellular response to nitrogen compound response to oxygen-containing compound cellular response to oxygen-containing compound response to lipoprotein particle cellular response to lipoprotein particle stimulus cellular response to low-density lipoprotein particle stimulus response to prostaglandin response to prostaglandin E cellular response to prostaglandin stimulus cellular response to prostaglandin E stimulus response to alcohol cellular response to alcohol response to ketone cellular response to ketone response to retinoic acid response to lipid cellular response to retinoic acid cellular response to lipid tissue development epithelial cell differentiation epithelium development carbohydrate homeostasis homeostatic process glucose homeostasis chemical homeostasis biological regulation regulation of biological quality lipid homeostasis macrophage derived foam cell differentiation foam cell differentiation lipid localization cholesterol storage regulation of lipid storage regulation of cholesterol storage negative regulation of cholesterol storage negative regulation of lipid storage lipid storage regulation of localization macromolecule localization negative regulation of biological process regulation of biological process localization maintenance of location regulation of lipid localization negative regulation of lipid localization metabolic process biosynthetic process regulation of biosynthetic process negative regulation of biosynthetic process negative regulation of metabolic process regulation of collagen metabolic process negative regulation of collagen metabolic process regulation of metabolic process collagen metabolic process collagen biosynthetic process regulation of collagen biosynthetic process negative regulation of collagen biosynthetic process positive regulation of metabolic process gene expression regulation of gene expression positive regulation of macromolecule metabolic process negative regulation of macromolecule metabolic process posttranscriptional regulation of gene expression positive regulation of gene expression negative regulation of gene expression posttranscriptional gene silencing gene silencing gene silencing by RNA post-transcriptional gene silencing by RNA gene silencing by miRNA macromolecule metabolic process positive regulation of biological process negative regulation of cellular process regulation of cellular process regulation of posttranscriptional gene silencing negative regulation of posttranscriptional gene silencing regulation of macromolecule metabolic process regulation of gene silencing by miRNA negative regulation of gene silencing by miRNA regulation of gene silencing by RNA negative regulation of gene silencing by RNA regulation of gene silencing negative regulation of gene silencing organic substance metabolic process regulation of macrophage derived foam cell differentiation negative regulation of macrophage derived foam cell differentiation regulation of cell differentiation negative regulation of cell differentiation regulation of developmental process negative regulation of developmental process cell population proliferation negative regulation of cell population proliferation regulation of cell population proliferation fibroblast proliferation regulation of fibroblast proliferation negative regulation of fibroblast proliferation pancreatic stellate cell proliferation regulation of pancreatic stellate cell proliferation negative regulation of pancreatic stellate cell proliferation regulation of sequestering of triglyceride negative regulation of sequestering of triglyceride sequestering of triglyceride muscle cell proliferation smooth muscle cell proliferation regulation of smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of vascular associated smooth muscle cell proliferation negative regulation of vascular associated smooth muscle cell proliferation vascular associated smooth muscle cell proliferation positive regulation of DNA binding positive regulation of molecular function regulation of binding positive regulation of binding regulation of DNA binding regulation of molecular function fat cell differentiation positive regulation of cell differentiation regulation of fat cell differentiation positive regulation of fat cell differentiation positive regulation of cellular process positive regulation of developmental process response to organic cyclic compound response to purine-containing compound response to caffeine response to alkaloid response to drug response to estrogen response to external stimulus response to mechanical stimulus response to abiotic stimulus response to metformin rhythmic process white fat cell differentiation	intracellular anatomical structure cytoplasm cytosol cellular anatomical entity organelle membrane-bounded organelle intracellular organelle intracellular membrane-bounded organelle nucleus nucleoplasm membrane-enclosed lumen nuclear lumen organelle lumen intracellular organelle lumen perinuclear region of cytoplasm protein-containing complex receptor complex transcription regulator complex RNA polymerase II transcription regulator complex nuclear protein-containing complex
B	Nuclear receptor subfamily 0, group B, member 2	molecular function regulator transcription regulator inhibitor activity signaling receptor binding binding protein binding peroxisome proliferator activated receptor binding protein domain specific binding identical protein binding protein homodimerization activity protein dimerization activity protein-containing complex binding transcription factor binding nuclear hormone receptor binding retinoic acid receptor binding hormone receptor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding nuclear receptor binding retinoid X receptor binding thyroid hormone receptor binding transcription coregulator activity transcription corepressor activity transcription regulator activity	metabolic process negative regulation of metabolic process gene expression regulation of gene expression negative regulation of macromolecule metabolic process negative regulation of gene expression regulation of metabolic process macromolecule metabolic process negative regulation of biological process regulation of biological process regulation of macromolecule metabolic process biological regulation organic substance metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of gene expression positive regulation of biological process response to organic substance response to chemical response to ethanol response to stimulus response to alcohol response to oxygen-containing compound response to carbohydrate response to hexose response to glucose response to monosaccharide response to organic cyclic compound	intracellular anatomical structure cytoplasm cellular anatomical entity nucleus organelle membrane-bounded organelle intracellular organelle intracellular membrane-bounded organelle protein-containing complex

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.