Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth R]d1nn8r_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth S]d1nn8s_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth T]d1nn8t_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth 1]d1nn81_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], SCOPe (2.08)
E [auth 2]d1nn82_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], SCOPe (2.08)
F [auth 3]d1nn83_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], SCOPe (2.08)
G [auth 4]d1nn84_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth 3]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like8036553 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth R]F_UNCLASSIFIEDe1nn8R2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
A [auth R]PF07686e1nn8R1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
A [auth R]PF08205e1nn8R3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08205ECOD (1.6)
B [auth S]F_UNCLASSIFIEDe1nn8S2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
B [auth S]PF07686e1nn8S1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
B [auth S]PF08205e1nn8S3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08205ECOD (1.6)
C [auth T]F_UNCLASSIFIEDe1nn8T2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
C [auth T]PF07686e1nn8T1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
C [auth T]PF08205e1nn8T3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08205ECOD (1.6)
D [auth 1]PF00073e1nn812 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
E [auth 2]PF00073e1nn821 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
F [auth 3]PF00073e1nn833 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
G [auth 4]PF02226e1nn841 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF02226ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth R],
B [auth S],
C [auth T]
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
A [auth R],
B [auth S],
C [auth T]
PF08205CD80-like C2-set immunoglobulin domain (C2-set_2)CD80-like C2-set immunoglobulin domainThese domains belong to the immunoglobulin superfamily.Domain
D [auth 1]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
E [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
F [auth 3]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
G [auth 4]PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth R],
B [auth S],
C [auth T]
poliovirus receptor
D [auth 1]coat protein VP1
E [auth 2]coat protein VP2
F [auth 3]coat protein VP3
G [auth 4]coat protein VP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth R],
B [auth S],
C [auth T]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth R],
B [auth S],
C [auth T]
IPR003599Immunoglobulin subtypeDomain
A [auth R],
B [auth S],
C [auth T]
IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth R],
B [auth S],
C [auth T]
IPR013106Immunoglobulin V-set domainDomain
A [auth R],
B [auth S],
C [auth T]
IPR013162CD80-like, immunoglobulin C2-setDomain
A [auth R],
B [auth S],
C [auth T]
IPR007110Immunoglobulin-like domainDomain
D [auth 1]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth 1]IPR002527Picornavirus 2B proteinDomain
D [auth 1]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth 1]IPR003138Picornavirus coat protein VP4Family
D [auth 1]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth 1]IPR001676Picornavirus capsidDomain
D [auth 1]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth 1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 1]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 1]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth 1]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth 1]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 1]IPR014838Poliovirus 3A protein-likeDomain
D [auth 1]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth 1]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth 1]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth 1]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth 2]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth 2]IPR002527Picornavirus 2B proteinDomain
E [auth 2]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth 2]IPR003138Picornavirus coat protein VP4Family
E [auth 2]IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth 2]IPR001676Picornavirus capsidDomain
E [auth 2]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 2]IPR000081Peptidase C3, picornavirus core protein 2ADomain
E [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth 2]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth 2]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth 2]IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth 2]IPR014838Poliovirus 3A protein-likeDomain
E [auth 2]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
E [auth 2]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
E [auth 2]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth 2]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
F [auth 3]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
F [auth 3]IPR002527Picornavirus 2B proteinDomain
F [auth 3]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
F [auth 3]IPR003138Picornavirus coat protein VP4Family
F [auth 3]IPR000199Peptidase C3A/C3B, picornaviralDomain
F [auth 3]IPR001676Picornavirus capsidDomain
F [auth 3]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
F [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth 3]IPR000081Peptidase C3, picornavirus core protein 2ADomain
F [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
F [auth 3]IPR009003Peptidase S1, PA clanHomologous Superfamily
F [auth 3]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
F [auth 3]IPR044067Picornavirales 3C/3C-like protease domainDomain
F [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
F [auth 3]IPR014838Poliovirus 3A protein-likeDomain
F [auth 3]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
F [auth 3]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
F [auth 3]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
F [auth 3]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
G [auth 4]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
G [auth 4]IPR002527Picornavirus 2B proteinDomain
G [auth 4]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
G [auth 4]IPR003138Picornavirus coat protein VP4Family
G [auth 4]IPR000199Peptidase C3A/C3B, picornaviralDomain
G [auth 4]IPR001676Picornavirus capsidDomain
G [auth 4]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
G [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth 4]IPR000081Peptidase C3, picornavirus core protein 2ADomain
G [auth 4]IPR029053Viral coat protein subunitHomologous Superfamily
G [auth 4]IPR009003Peptidase S1, PA clanHomologous Superfamily
G [auth 4]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
G [auth 4]IPR044067Picornavirales 3C/3C-like protease domainDomain
G [auth 4]IPR033703Picornavirus/Calicivirus coat proteinDomain
G [auth 4]IPR014838Poliovirus 3A protein-likeDomain
G [auth 4]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
G [auth 4]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
G [auth 4]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
G [auth 4]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain